Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL----ESAQAFANKYHL-PKAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAES--CNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISISSTTAYPNIDHVTWFRELELGGGTVHFMAPYALSYLQYLFDATITHASGTA-TFP---KGQSDSQSKLLLQLSNGVLVDIFLTTRLNL------PHEMIIYGTEGRLIIPHFWKTTHAKLVRNDTSARTIQVDMVSDFEKEAYHVSQMILEGQRVSHIMTPQLTLSGVKIIEDLYRSWGK |
| 3IP3 Chain:A ((2-323)) | --SLKICVIGSSGHFRYALEGLD--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKSYKLGQRPDFYKKRETYGGTIPWVGIHAIDWIHWITGKKFLSVYATHSRLHNSGHGELETTALCHFTLENEVFASLSIDYLRPQGAPTHDDDRMRIVGTRGIVEVINERVF----LTDEKGHR---EV-PLVEKGQIFEDFLREIRGQG--KCMVTPEDSILTTEIALKARLSADT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182627 for 2615 contacts (-69.8/contact) +
2D Compatibility (PS) -32717 + (NN) -6677 + (LL) 1376
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -232795.0 ( -89.02 by residue)
QMean score : 0.454
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