Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKTQALIEQYSKSLVEVAIEHKIV-EKIQQEVAALIDIFETSELEGVLSSLAVSHDEKQHFVKTLQTSCSTYLVNFLEVIVQNEREALLY---PILKSVDQELIKVNGQYPIQITTAVALSPEQKERLFDIAKTKLALPNGQLVEHIDPSIVGGFVVNANNKVIDASVRNQLHQFKMKLK
2DAP Chain:? ((119-268))
WDPGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALR-----RIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQT-----HKRQCFVVADAADHERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHTGMPH------------------GGHVITTGDT----GGFNHTVEYILKLD
General information:
TITO was launched using:
RESULT:
Template:
2DAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24192 for 1044 contacts (-23.2/contact) +
2D Compatibility (PS) -15133 + (NN) 2505 + (LL) 2900
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -35770.0 ( -34.26 by residue)
QMean score : 0.259
(partial model without unconserved sides chains):
PDB file :
Tito_2DAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DAP-query.scw
PDB file :
Tito_Scwrl_2DAP.pdb
: