Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELVIRDIRKRFQE--TEVLRGASYRFYSGKITGVLGRNGAGKTTLFNILYGDLAADNGTICLLKDNHEY------PLTDKDIGIVYSENYLPEFLTGYEFVKFYMDLHPS--D-DLMTIDDYLDFMEIGQTERHRIIKGYSDGMKSKLSLICLMISKPKVILLDEPLTAVDVVSSIAIKRLLLELS--EDHIIILSTHIMALAEDLCDIVAVLDKGKLQTLDIDRKHEQFEERLLQVLKGDEYDK
1OXX Chain:K ((3-227))
-RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINE
General information:
TITO was launched using:
RESULT:
Template:
1OXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151803 for 1716 contacts (-88.5/contact) +
2D Compatibility (PS) -22582 + (NN) -5553 + (LL) 328
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -191210.0 ( -111.43 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1OXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXX-query.scw
PDB file :
Tito_Scwrl_1OXX.pdb
: