Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSKNPDNYMFLMHKISLTTNSGSLTLSGTNGPIIWEPCLDKPTDENNRFNLEKNEFSELKIFEITEEVEETYNDMMKLSWVEAISKSVIDFTNNIEAEKVDLREQQYLISAIEAWRALSRELGQSNTIQPYKKTAIKMEDLI
1F3M Chain:A ((9-78))
-----PSDFEHTIH-VGFDAVTGEFT--GM--PEQWARLLQTSNITKSEQKK--NPQAVLDVLEFY--NSKKTS---NSQKYMSFTD--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7096 for 342 contacts (-20.7/contact) +
2D Compatibility (PS) -7604 + (NN) -3825 + (LL) 5908
1D Compatibility (HY) -800 + (ID) 550
Total energy: -13967.0 ( -40.84 by residue)
QMean score : 0.004
(partial model without unconserved sides chains):
PDB file :
Tito_1F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3M-query.scw
PDB file :
Tito_Scwrl_1F3M.pdb
: