Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLSWEDYFMANAELISKRSTCDRAFVGAVLVKNNRIIATGYNGGVSET-DNCNEVGHYMEDGHCIRTV-HAEMNALIQCAKEGISTNNTEIYVTHFPCINCTKALLQAGVKKITYKANYRPHPFAIELMEAKGVAYVQHDVPEVTLGMEE
4P9C Chain:D ((9-120))
------KEAYMKTAELFSQVSNCKRMKVGAIVVKNGSILAHGWNGTPSGFHTNCCE----LEDGSTNPFVLHAEQNALVKMAKSSESIDGSELFCTHSPCPDCSKMIAQAGVKKVYYRNEYRITDGIDVLQQLGVEVEKM------------
General information:
TITO was launched using:
RESULT:
Template:
4P9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55521 for 834 contacts (-66.6/contact) +
2D Compatibility (PS) -12136 + (NN) -8410 + (LL) 1732
1D Compatibility (HY) -7200 + (ID) 2600
Total energy: -84135.0 ( -100.88 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_4P9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P9C-query.scw
PDB file :
Tito_Scwrl_4P9C.pdb
: