Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSGNTQSFVKRLSEQLSTWHNCQVSTINIKEQNH----QTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIA---AHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFG---FPMLG---DFELRGTSSDVERIANIIVETLSNFKA
1F4P Chain:A ((1-147))
-PKALIVYGSTTGNTEYTAETIARELADAGY----EVDSRDAASVEAGGLFEGFDLVLLGCSTWGD---DSI-E----LQDDFIPLFDSLEETGAQGRKVACFGCGDSSWE-YFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPR-AARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
1F4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69034 for 1096 contacts (-63.0/contact) +
2D Compatibility (PS) -14434 + (NN) -4774 + (LL) 496
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -91796.0 ( -83.76 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1F4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F4P-query.scw
PDB file :
Tito_Scwrl_1F4P.pdb
: