Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
3JVH Chain:C ((24-179))
-FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF------FKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR-
General information:
TITO was launched using:
RESULT:
Template:
3JVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119791 for 1277 contacts (-93.8/contact) +
2D Compatibility (PS) -16104 + (NN) -6447 + (LL) -240
1D Compatibility (HY) -14400 + (ID) 4600
Total energy: -161582.0 ( -126.53 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_3JVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVH-query.scw
PDB file :
Tito_Scwrl_3JVH.pdb
: