Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQ-GFTKPNDLHKKSSRIVSAKSQAEILFFLQ--NQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT
2QVW Chain:A ((644-751))
-----------PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSE--------VIIESHPK----IQPDSK----VYGDTFEAILAAILLACGEEAAGAFVREHVLPQ-----------
General information:
TITO was launched using:
RESULT:
Template:
2QVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32137 for 722 contacts (-44.5/contact) +
2D Compatibility (PS) -11123 + (NN) -5528 + (LL) 2332
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -51356.0 ( -71.13 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_2QVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QVW-query.scw
PDB file :
Tito_Scwrl_2QVW.pdb
: