Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIMKLGPRRGDGAPMAIIELV
5GAE Chain:O ((6-116))
-SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDN--------EIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELV
General information:
TITO was launched using:
RESULT:
Template:
5GAE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38320 for 744 contacts (-51.5/contact) +
2D Compatibility (PS) -12382 + (NN) -6133 + (LL) 632
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -68553.0 ( -92.14 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_5GAE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAE-query.scw
PDB file :
Tito_Scwrl_5GAE.pdb
: