Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKTIFAFLTGLMMFGTITAASASPDSKNQTAKKPKVQTGIDTLLPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAMEAAKENGIPFMVLDRPNPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLF-NKEFSI----DADLTVVKMKHWKRK-----MDFDDTRLPFVLPSPN----MPTVESTFVYPATGLIEG-------TNISEGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTPTFSKHQGTLCHGVQLYVTDRDKFEAVKTGLSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIRTKIENGTSVENIINSYEKTLQQFSKTRKKYLIY |
| 2VVE Chain:A ((3-254)) | ----------------------------QEQTTKSRDVNSFQIPLRD------GVRELLPEDASRNRASIKSPVDIWIGGEN--MTALNGIVDGGRKF-EAGQEFQINTFGSVNYWVSDEEIRVFKEYSARAK--------------------YAQNEGRTALEANNVPFFDIDVP----------PELDGVPFSLKARVRHKSKGVDGLGDYTSISVKPAFYITEGDETTDTLIKYTSYGSTGSHSGYDFDDNTLDVMVTLSAGVHRVFPVETELDYDAVQEVQHDWYDESFTTFIEVYSDDPLLTVKGYAQILMERT-------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -4254 for 1628 contacts (-2.6/contact) +
2D Compatibility (PS) -24139 + (NN) -947 + (LL) 11664
1D Compatibility (HY) -5200 + (ID) 2700
Total energy: -25576.0 ( -15.71 by residue)
QMean score : 0.133
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