Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLT-QLETMKDKIQTLDYLFQNCKPEFLGGT-VDEWLNENSSDTIEKSVDMIRHHPLVPS------YVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
5BQ1 Chain:A ((29-194))
--RQQTPEYLWIGCSDARVPAN--EIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTV-------------
General information:
TITO was launched using:
RESULT:
Template:
5BQ1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42822 for 1235 contacts (-34.7/contact) +
2D Compatibility (PS) -16175 + (NN) 2371 + (LL) 1064
1D Compatibility (HY) -8000 + (ID) 1100
Total energy: -64662.0 ( -52.36 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_5BQ1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BQ1-query.scw
PDB file :
Tito_Scwrl_5BQ1.pdb
: