Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK---------DAIPVLVEALKEE-GSLCNIAAAVLGEFGEDA------SEAAEELSCLLKSHAEDTRMAAAISLMRIGKP---------SLPFVIKIAQESEGQSCFWASWCIAWIDPSC----IEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
4LAC Chain:A ((77-256))
----------IVELAEDAKWRVRLAIIEYMPLLAGQLGVEYFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ-EALTVLS---------
General information:
TITO was launched using:
RESULT:
Template:
4LAC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99935 for 1132 contacts (-88.3/contact) +
2D Compatibility (PS) -15846 + (NN) -8984 + (LL) 916
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -130199.0 ( -115.02 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4LAC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAC-query.scw
PDB file :
Tito_Scwrl_4LAC.pdb
: