Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------MKRMIVRMTLPLLIVCLAFSSFSASARAASEE-----------------KYWDHWIERHAQPLDASNASNKDLRFLKKVLKGKRIVQLGETTHGAGEINATKVRMIKYLHEELGYDVLAFESGFPDTNASYLNMDQLTPKSTMKNSIYAVWHTEDVVELFDYMKEQKEKGDPLILTGFDIQSMKNSFNVAATQWVKAVDPEKAELLSQSENDFSTLVTDSNTFDEFSQKKEKLVKNYQKLIKFTKTHASELKENLPKEPKAYEM---FMHSLQLRIDVMETYMLEEMKEKLEEYP---ENIEDFSFFMRDRMMAEQFQWVADTLYPKKKIIVW----GHNYHLRKQNTKMIKDWVQLNGPNMGDYLPERLKKQTYTIG-IYAYSGASLDSSDN-KTVKPVTSPPPSGSLEALLKAADRP---------AVFVDFLHTKNKKGTSWMYTPRTALYWGYMEEQMILKEQYDGVIWLEHITPSVIIK
2OCA Chain:A ((1-503))MDIKVHFHDFSHVRIDCEESTFHELRDFFSFEADGYRFNPRFRYGNWDGRIRLLDYNRLLPFGLVGQIKKFCDNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDE--CHLATGKSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGIDRIQRYADEKFNYVMKTVNLL-


General information:
TITO was launched using:
RESULT:

Template: 2OCA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2045 -149392 -73.05 -339.53
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : -73.05
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.162

(partial model without unconserved sides chains):
PDB file : Tito_2OCA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2OCA-query.scw
PDB file : Tito_Scwrl_2OCA.pdb: