Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------MKTKVVMCSGLFCSVFAGAFMLNQYDGRSGVAACDEWELYLLEHHLSARMSETESKDLPFGPREYIRIVNK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1Q8K Chain:A ((3-302))MSCRFYQHKFPEVEDVVMVNVRSIQEMGAYVS-------LLEYNNIEGMIHLSE---------LSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLERENAEVDGD


General information:
TITO was launched using:
RESULT:

Template: 1Q8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 144 14350 99.65 260.91
target 2D structure prediction score : 0.42
Monomeric hydrophicity matching model chain A : 0.57

3D Compatibility (PKB) : 99.65
2D Compatibility (Sec. Struct. Predict.) : 0.42
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.235

(partial model without unconserved sides chains):
PDB file : Tito_1Q8K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Q8K-query.scw
PDB file : Tito_Scwrl_1Q8K.pdb: