Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MGKNSKAIGNNHVKSVYQALLQSLKSKSVNGFSKITIETISFIKNLYP----EIDSVTSKFDNSRPDQSKDLT----LYLKSGETISLNLFLIKKGRRIQPKNAGAKSFLEKYFLSAEMQKIFNKEFERYYLDYLKEVVEHKKGTHYITDKRELKRLVSSHFPKFTEEINLYRDKFLFNLRETCFTLLQQFYNEKNIGFTHAFNVFFMVNDTNIITSYGKDENDVK--VEKFAPASPSLKDIELYKTGKSTVGIKFGEVGLTLR----FKFESDPWKSIKLATGYHEFPKEKERVNVNLKTMR-RMEKLLNKH-----------EYAKTSN---NSNAIGKCHEAWTYYYFLKAFPDVIQVDPKQCVELINTYFSSINQNTLKKLYSSTSTIVDAITEKLRQKYHDYIIE---SIELIPDAYIKDRLDTGDLQLVLKVNNNIIVENISLKALAKRNSKITTKNPGMGSILGPTYFNMGSMESVINEVKNKFTIGEFNHRKSLEILSYEFGMKLDSATQEQLRRGIHNLLGKAM--IAITIYGEGISFCKEPSEIDGEVKVHVNVP----SAIQNTLTWNNELESISLRAK-------FSKSQKHGWSSIKLTSECQLESRK 4YJ1 Chain:A ((1-615)) -GFSPLMDFFHSVEGRNYGELRSLTNETYQISENVRCTFLSIQSDPFAPGSQVRLVCPCTFSLEKVLQTTDLAAANPCRRVAAEDFILRSFHAGYRNGIPRRTSGAVQVLRPSQHVLERSTVGLVKAHQAEIEIFARVKLPGHG-RRIDGHGAIDIFYNELVPLLEQCVVGLNEEDLHQHVICVHDQEVLRSNLLGAGY-----VAFVANGAILPRDAGNSDKPLRDNAVPFQSPKSLECSFTLPHSGKTITGMGLPP-GLTLIAGGGFHGKSTLLRALEVGIYNHVPDDGRTYVVVDPTAVKIRAEDRRSVHGVDISPFINNLPFGKTTNFFVTADASGSTSQAANIMEALELGSQLLLLDEDTCATNLM-YRDALMQMLVPRAQEPITPFVERVADLSQNHGVSSIMVIGGSGQYFPQARVVLVMN----------AYQISDCTKEAKEIASNSSLPGDTASVFIPDVNRCFDPDGSFTTVRRGTK-VSGIGTESIRFSEETIDLSMVEQIVEEGQVNAIAQCLALLYDGEPRIVPEMTTKGGALTQLPS-PGGVCEIQRGKFNSNFSSMIAGCCSHQHDKRLELRTPSCYLPRGFTSATRHIEIGAALNRLRTLRTVT

General information: TITO was launched using: RESULT: Template: 4YJ1.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2954 49097 16.62 88.46 target 2D structure prediction score : 0.44 Monomeric hydrophicity matching model chain A : 0.64 3D Compatibility (PKB) : 16.62 2D Compatibility (Sec. Struct. Predict.) : 0.44 1D Compatibility (Hydrophobicity) : 0.64 QMean score : 0.134

(partial model without unconserved sides chains): PDB file : Tito_4YJ1.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4YJ1-query.scw PDB file : Tito_Scwrl_4YJ1.pdb: