Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVVDNYDSFVFNLVQYLGQLGIEAEVWRNDDHRLSDEAAVAGQFDGVLLSPGPGTPERAG---ASVSIVHACAAAHTPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVF-------------------------------HTNVGVLQGLPD-PFTATRYHSLTILPKSLPAVLRVTARTSSGVIMAVQHTGLPIHGVQFHPESILTEGGHRILANWLT-CCGWTQDDTLVRRLENEVLTAISPHFPTSTASAGEATGRTSA
4WIN Chain:A ((19-245))
DKILVLNFGSQYFHLIVKRLNNIKIFSETKDYGVELK-DI--KDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVT--KIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKK------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4WIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140499 for 1650 contacts (-85.2/contact) +
2D Compatibility (PS) -20265 + (NN) -7646 + (LL) 2152
1D Compatibility (HY) -12800 + (ID) 2000
Total energy: -181058.0 ( -109.73 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_4WIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WIN-query.scw
PDB file :
Tito_Scwrl_4WIN.pdb
: