Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MAIFGRWSARQRLRRATRESLTIPTFSSSLDCTTRVIGGLWPAELSSNTAETATLAEHLKADLHRIVGSANDELMVIWRAGMADSTRRAEEDRVIDRARASAMRRVESAMRELRQITGRVPVEIPRMRGAGGSDLDTTRLMPAVTVVQPADQACTDWPVAAAEDDEARLQRLLAFVARQEPRLNWAVGVHADGTTVLVTDVAHGWIPPGIALPEGVRLLAPARRAGRAPELVGITTCCKTYTPGDSLRRAVDSTAPTSSVQPRALPAIAGLSVELGIATQRHDGLPKIVHAMATAAGNGAAAE-EVDLLRVHVDTALHHVLAQYPRVDPALLLNCMLLAATERS--VTGDPIAANYHFAWFRELDSRR----------- |
| 2NIP Chain:A ((1-286)) | AMRQCAIYGK-------------------------------GGIGKSTTTQNLV--AALAE------------MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVL---------KAGYGG-----------VKCVE------SGGPEPGVGCAGRGVITAINFLEE--------EGAYEDDLDFVFYDVLGDVVCGGFA--------MPIRE-NKAQEIYIVCS-----GEMMAMYAANNISKGIVKYANSGSVRLGGLICN----SRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLMEFGIMEVEDESIVGKTA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86201 for 2394 contacts (-36.0/contact) +
2D Compatibility (PS) -28104 + (NN) -8332 + (LL) 6796
1D Compatibility (HY) -5600 + (ID) 2550
Total energy: -123991.0 ( -51.79 by residue)
QMean score : 0.306
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