Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPSFDVVFVGHRR---GEVRSDNAMLGLLCDAAFDEL--TRPDVVIFPGGIGTR-TLIHDQTVLDWVREAHRHTLLTTSVCTGGL-VLAAAGLLNGLTATTHWRVQDLFNSLGARYVP-QRVVEHLPE--RVITAAGVSSGIDMGLRLVELLVSREAAEASQLMIEYDPQPPVDAGSLAKASPATHRLALEFYQHRL
2AB0 Chain:A ((29-190))
--GIKVTTASVASDGNLAITCS-RGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLK---DKIPAEQWLDKRVVW--DARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAG---------------------------
General information:
TITO was launched using:
RESULT:
Template:
2AB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85654 for 1125 contacts (-76.1/contact) +
2D Compatibility (PS) -16731 + (NN) -7464 + (LL) 2184
1D Compatibility (HY) -10400 + (ID) 1750
Total energy: -119815.0 ( -106.50 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_2AB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AB0-query.scw
PDB file :
Tito_Scwrl_2AB0.pdb
: