Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNRIVLEPSADHPITIEPTN------RRVQVRVNGEVVADTAAALCLQEASYPAVQYIPLADVVQDRLIRTETSTYCPFKGEASYYSVTTDAGDIVDDVMWTYENPYPAVAAIAGHVACYPDKAEISIFPG-----
2LGE Chain:A ((1-129))
GDDDEPGGKGAMYEVTIEQSGDFRSFIKSVVVVANGTQLKDGA-----TGESLASPVILSDEELAVEKVTLSTTGKAIEFAVSGGV--VDGEDGVVNEPMQWVVTV-YKNGKEIEKKSLVFRDGKEISTDDLNLYYN
General information:
TITO was launched using:
RESULT:
Template:
2LGE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19968 for 747 contacts (-26.7/contact) +
2D Compatibility (PS) -12076 + (NN) 1559 + (LL) 620
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -33365.0 ( -44.67 by residue)
QMean score : 0.096
(partial model without unconserved sides chains):
PDB file :
Tito_2LGE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LGE-query.scw
PDB file :
Tito_Scwrl_2LGE.pdb
: