Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIRIGTRGSLLA---TTQAATVRDALIAGGHSAELVTISTEGDRSMAPIASLGVGVFTTALREAMEAGLVDAAVHSYKDLPTAADPRFTVAAIPPRND------------PRDAVVARDGLTLGELPVG--------------------SLVGTSSPRRAA----QLRALGLGLEIRPLRGNLDTRLNKVSSGDLDAIVV--ARAGLARLGRLDDVTETLEPVQMLP----APAQG--------ALAVECRAGD-------SRLVAVL---AELDDADTRAAVTAERALLADLEAGC----------SAPVGAIAEVVESIDEDGRVFEELSLRGCVAALDGS------------DVIRASGIGSCGRARELGLSVAAELFELG----ARELMWGVRH-- |
4X4W Chain:A ((1-409)) | MFTMKLQSPEFQSLFTEGLKSLTELFVKENH--ELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINGTITARLHEENFEITTLRIDVTTDGAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKTL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4X4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -50490 for 2088 contacts (-24.2/contact) +
2D Compatibility (PS) -33862 + (NN) -17481 + (LL) 116
1D Compatibility (HY) -9200 + (ID) 2700
Total energy: -113617.0 ( -54.41 by residue)
QMean score : 0.221
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