Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MSEVASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRLRGAQADPGLRNDLAVLAGDTTEDLGPIR--
1PU1 Chain:A ((1-91))
MSLRKLTEGDLDEISSFLHNTISDFILKRVSAKEIVDIDITVLVEYTDELKVDISAELYLDELSDA--DPGIVDEAVDAAYRSLESFLDGFRE
General information:
TITO was launched using:
RESULT:
Template:
1PU1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5333 for 512 contacts (10.4/contact) +
2D Compatibility (PS) -8577 + (NN) 298 + (LL) 264
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -5732.0 ( -11.20 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1PU1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PU1-query.scw
PDB file :
Tito_Scwrl_1PU1.pdb
: