Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLVRVERKGRVTTVILNRPASRNAVNGPTAAALCAAFEQFDRDDAASVAVLWGAGGTFCAGADLKAFGTPEANSVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDMILTGRGVPADEALAMGLANRVVPKGQARQAAEELAAQLAAL-PQQCLRSDRLSALH-QWGLPESAALDLEFASIARVAGEALEGARRFAAGAGRHGAPAPRAEQGDTL
3TRR Chain:C ((5-246))
MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERG----LGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFA-------------------
General information:
TITO was launched using:
RESULT:
Template:
3TRR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130132 for 2016 contacts (-64.5/contact) +
2D Compatibility (PS) -26299 + (NN) -12782 + (LL) -252
1D Compatibility (HY) -9200 + (ID) 5050
Total energy: -183715.0 ( -91.13 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3TRR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRR-query.scw
PDB file :
Tito_Scwrl_3TRR.pdb
: