Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSRRRAIQPSPALRIGPIELASPVVLAPMAGV-TN--VAFRALCRQL----EQSKVGTVSGLYVCEMVTARALIER--------HPV---TMH-MTT-FSADESPRSLQLYTV----------------------DP------------DTTYAAARMIAGEGLADHIDMNFG---------CPVPKVTKRGGGAALPFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDD----AHHTHLDAGRIAEAEGAAAVALHARTAAQR------YSGTADW-EQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLDGTVPFPDSATGARGRQGSPARVALPDGWLTDPDDCRVPEGADAMGSGG |
| 1PS9 Chain:A ((8-328)) | -----------PLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHG-----VALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAG-YDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVG-NDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHV-SLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRA--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -143257 for 1936 contacts (-74.0/contact) +
2D Compatibility (PS) -26765 + (NN) -15011 + (LL) 5736
1D Compatibility (HY) -5600 + (ID) 2000
Total energy: -186897.0 ( -96.54 by residue)
QMean score : 0.404
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