Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAW-----QDHAEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCG-------VPYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4UUA Chain:B ((26-275))
--IAIITGAGVSAESGVPTFRG-PGGFWRKWQAQDLATPEAFSRDPSLVWEFYHYRREVMRSKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYPAAMFAPQVASRGVPVAEFNMECTPATQRFKYHFEGPCGSTLPPALE-------
General information:
TITO was launched using:
RESULT:
Template:
4UUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103145 for 1795 contacts (-57.5/contact) +
2D Compatibility (PS) -24584 + (NN) -13841 + (LL) 928
1D Compatibility (HY) -18000 + (ID) 4850
Total energy: -163492.0 ( -91.08 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4UUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UUA-query.scw
PDB file :
Tito_Scwrl_4UUA.pdb
: