Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
1BTM Chain:B ((1-245))
--RKPIIAGNWKMHKTLAEAVQFVEDVKGHVPPA--DEVISVVCAPFLFLDRLVQAADGTDLKI--GAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGPLVGGASLEPASFLQL----------
General information:
TITO was launched using:
RESULT:
Template:
1BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148850 for 2133 contacts (-69.8/contact) +
2D Compatibility (PS) -27323 + (NN) -17457 + (LL) 840
1D Compatibility (HY) -20000 + (ID) 5600
Total energy: -218390.0 ( -102.39 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BTM-query.scw
PDB file :
Tito_Scwrl_1BTM.pdb
: