Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVALIWLIAALVLVGAEALTGDMFLLMLGGGALAASVSSWLLAWPMWADGAVFLLVSVLLLVLVRPAVRRRLTQTKG-VQLGIEALEGKKAVVLGRVARDGGQVKLDGQVWTARPLNDGDVFEPGDSVTVVQIDGATAVVFKDV
1RYJ Chain:A ((4-73))
-----------------------------------------------MVIGMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKK---NGQIVIDEEEIFDGDIIEVIRVIYGG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11603 for 416 contacts (-27.9/contact) +
2D Compatibility (PS) -7034 + (NN) 3289 + (LL) 6900
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -10698.0 ( -25.72 by residue)
QMean score : 0.104
(partial model without unconserved sides chains):
PDB file :
Tito_1RYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYJ-query.scw
PDB file :
Tito_Scwrl_1RYJ.pdb
: