Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MTRVVVIGSGFAGLWAALGAARRLDELAVLAGTVDVMVVSNKPFH-----DIRVRNYEADLSACRIPLGDVLG--PAGVAHVTAEVTAIDADGRRVTTS--------------------TGASYSYDRLVLASGSHVVKPALPGLAEFGFDVDTYDGAVRLQQHLQGLA--------GGPLTSAAATVVVVGAGLTGIETACELPGRLHA-LFARGDGVTP--RVVLIDHNPFVGSDMGLSARPVIEQALLDNGVETRTGVSVAAVSPGGVTLSS--------GERLAAATVVWCAGM----RASRLTEQLPVARDRLGRLQVDDYLRVIGVPAMFAAGDVAAARMDDEHLSVMSCQHGRPMGRYAGCNVINDLFDQPLLALRIPW----------YVTVLDLGSAGAVYTEGWERKVVSQGAPAKTTKQSINTRRIYPPLNGSRAD---LLAAAAPRVQPRP- |
| 4G9K Chain:A ((1-471)) | MKVIDPQHSDKPNVLILGSG----WGAISFLKHID-----TKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPT--AQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILSARSRLKVFFDWIKLAFFKRDFFKGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G9K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263631 for 3168 contacts (-83.2/contact) +
2D Compatibility (PS) -41907 + (NN) -7491 + (LL) 1292
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -328087.0 ( -103.56 by residue)
QMean score : 0.445
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