Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTRFGDFKPREHNLLAIPITETVFECHAGGHIYDRGVDGSVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2M89 Chain:A ((1-134))
-----MVNINHRIGIKASPEKIYQALTTDDGLKKWWTNDISGAGVVGSTIKFRFNGGG----------PDFKVTKLIPNKTVCWQHA-----GNMPESWMGTEISFQLETVE-NQTFVRFTHSNWH------ETTDFMAHCNTKWAVFLLSLKDALEIGKG-
General information:
TITO was launched using:
RESULT:
Template:
2M89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36099 for 918 contacts (-39.3/contact) +
2D Compatibility (PS) -14293 + (NN) -2516 + (LL) 348
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -56860.0 ( -61.94 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_2M89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M89-query.scw
PDB file :
Tito_Scwrl_2M89.pdb
: