Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSTRRDLPQSPYLAAVTGRKPSRVPVWFMRQAGRSLPEYRALRERYSMLAACFEPDVACEITLQPIRRYDVDAAILFSDIVVPLRAAGVDLDIVADVGPVIADPVRTAADVAAMKPLDPQA-IQPVLVAASLLVAELGDVPLIGFAGAPFTLASYLVEGGPSRHHAHVKAMMLAEPASWHALMAKLTDLTIAFLVGQIDAGVDAIQVFDSWAGALSPIDYRQYVLPHSARVFAALGEHGVPMTHFGVGTAELLGAMSEAVTAGERPGRGAVVGVDWRTPLTDAAARVVPGTALQGNLDPAVVLAGWPAVERAARAVVDDGRRAVDAGAAGHIFNLGHGVLPESDPAVLADLVSLVHSL |
2INF Chain:A ((6-343)) | ------TFNETFLKAARGEKADHTPVWYMRQAGRSQPEYRKLKEKYGLFEITHQPELCAYVTRLPVEQYGVDAAILYKDIMTPLPSIGVDVEIKNGIGPVIDQPIRSLADIEKLGQIDPEQDVPYVLETIKLLVNEQLNVPLIGFSGAPFTLASYMTEGGPSKNYNKTKAFMYSMPDAWNLLMSKLADMIIVYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGASHLAGDWHDLP--------LDVVGLDWRLGIDEARSK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQG-----MESDGFIFNLGHGVFPDVSPEVLKKLTAFVHEY |
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General information:
TITO was launched using:
| RESULT:
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Template: 2INF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -263995 for 2936 contacts (-89.9/contact) +
2D Compatibility (PS) -36105 + (NN) -14958 + (LL) 1024
1D Compatibility (HY) -31200 + (ID) 7500
Total energy: -352734.0 ( -120.14 by residue)
QMean score : 0.537
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