Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTRSREEYFNLPLKVDESSGTIGKMFVLVIYDISDNRRRASLAKILAGFG-YRVQESAFEAMLTKGQLAKLVARIDRFAI-------DCDNIRIYKIRGVAAVTFYGRGRLVSAEEFVFF
2IVY Chain:A ((2-89))
------------------------AMLYLIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITENQFRERIVIGYS---------
General information:
TITO was launched using:
RESULT:
Template:
2IVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58302 for 479 contacts (-121.7/contact) +
2D Compatibility (PS) -8702 + (NN) -3261 + (LL) 2100
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -74415.0 ( -155.35 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2IVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IVY-query.scw
PDB file :
Tito_Scwrl_2IVY.pdb
: