Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIDPNSIGA-V-TEPMLFEWTDRDTLLYAIGVGAGTGDLAFTTENSHGIDQQVLPTYAVICCPA-FGAA-------------AKVGTFNPAALLHGSQGIRLHAPLP-AAGKLSVVTEVADIQDKGEGKNAIVVLRGRGCDPESGSLVAETLTTLVLRGQGGFGGARGERPAAPEFPDRHPDARIDMPTREDQALIYRLSGDRNPLHSDPWFATQLAGFPKPILHGLCTYGVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVAG |
| 3KH8 Chain:A ((3-289)) | --VNVD-KILNSPEATYTATYNQRDLLMYAVGIGES--DLQFTYEFDEK--FSAFPLYPVCLPFKGQSQDVVPFPPETISAAPDGMPSFNPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGK--GTLMETQTQFED--GNGPVAKLISGSFIRGLTGYEGKGRKLPARVQIPKRQPDFNDEFKTSPHQAQVYRLSGDYNSLHIDPEIAKS-VGFKQPILHGLCSMGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQA-VVKER---GAVIVD-GGEFV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KH8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118909 for 2157 contacts (-55.1/contact) +
2D Compatibility (PS) -28649 + (NN) -11405 + (LL) 632
1D Compatibility (HY) -17600 + (ID) 4800
Total energy: -180731.0 ( -83.79 by residue)
QMean score : 0.386
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