Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MRAGLLLSLAWADYRGEARLSLCAIFALAAVITPLLVLFGLKYGL-----VSTLTERLERAPSVREIIPVGGARYRAEDIAALAARADVAFAVPRTRQIAATADLSGGGETALSVEMIPSAAGDPLLAGLPQPDRPTRVVLSHGAAEKLGAQPGERIVARIGRRMDGQAQSQRLELEVLAVLPQERFARDALFAPLALLEAAEDYRDGRAVAAYGWPGKAGETPRARIYPGFRLYARDLDAVEGLRRHFVASGVEVA--TQAEAIAQVRSLSRNLGL--VFWIVAALAIGGAFAAIAASSLAAVERKRRALAVLRLLGFPTAAL-VGFVMLLALFSAVFGLFLAGLLYAATAGALNHLFDNQSGEFVCRLLPSHYLTALLAT----LLCSVLAAASGGWRAARIEAAEGLRDV- |
| 4WGV Chain:A ((5-399)) | VGYMDPGNWITSMQGGAQ--YGYTLLFVILISSLAAMLLQSMTVRLGIATGKDLAQMTRHFLSKPVAIIFWIIAELAIIATDIAEVIGSA-IALDLIFGIPLIVGALI-----TVFDVFLLLFIMRFGFRKIEAIVGTLIFTVLAIFVFEVFISSP------QLTDILNGFVPHKE-------IVTNQGILYIALGIIGATIMPHNLYLHSSIVQSRKYDRHDNEEKAQAIKYATIDSNLQLSIAFVVNCLLLTLGAALFFGTKTNDLGGFYDLYHALKTEPVLGATLGGVMSTLFAVALLASGQNSTITGTLAGQIVMEGFLRLSIPNWLRRLITRSLAVIPVIICLIIFKGNSEKIEQLL-VFSQVFLSIALPFSLIPLQLATSNKKLMGPFINKTWVNIISWTLIVILSGLNVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -205725 for 3176 contacts (-64.8/contact) +
2D Compatibility (PS) -40040 + (NN) -16027 + (LL) 984
1D Compatibility (HY) -20400 + (ID) 2650
Total energy: -283858.0 ( -89.38 by residue)
QMean score : 0.315
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