Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPA-----FPINTLTLMRGAQGYLG-G-EGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVG---DEQVKEGLKATTEEAVRRGVFGAPSFFVG--DQ--LFFGQDRLDFVAEVLAG
1R4W Chain:A ((5-212))
-PRVLELFYDVLSPYSWLGFEVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMELLAYLLGE
General information:
TITO was launched using:
RESULT:
Template:
1R4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142934 for 1540 contacts (-92.8/contact) +
2D Compatibility (PS) -20872 + (NN) -7189 + (LL) 208
1D Compatibility (HY) -15200 + (ID) 2550
Total energy: -188537.0 ( -122.43 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1R4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R4W-query.scw
PDB file :
Tito_Scwrl_1R4W.pdb
: