Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGRPQAVPTVQVDNAEVIVTEWRFAPGAETGRHRHG-------HDYVVVPLTDGTLLLETPEGDRH---------------------APLVAGQAYFRKAGVEHNVINASAHEVVFVETEIK
2Y0O Chain:A ((48-151))
------------VNTDRYCSKELVLFPGQTCPEHRHPPVDGQEGKQE-TFRCRYGKVYLYVE-GE-KTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPPNTKHWFQAGEE-GAVVTEMSST
General information:
TITO was launched using:
RESULT:
Template:
2Y0O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30674 for 483 contacts (-63.5/contact) +
2D Compatibility (PS) -8475 + (NN) -1147 + (LL) 1088
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -42408.0 ( -87.80 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_2Y0O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y0O-query.scw
PDB file :
Tito_Scwrl_2Y0O.pdb
: