Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MSITSTDICQAADALKGFVGFNRKTGRYIVRFSED-----SFGMDVADDSITPTSEFVWSSVRDDVMRLGREQLQI-----LLEQNINERLNIGEPLLVYLRR--QDLPEITAQRQLR---------
2SCU Chain:A ((1-119))
SILIDKNTKVICQ---------GFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGP
General information:
TITO was launched using:
RESULT:
Template:
2SCU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5394 for 689 contacts (-7.8/contact) +
2D Compatibility (PS) -10508 + (NN) -847 + (LL) 748
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -20651.0 ( -29.97 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_2SCU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SCU-query.scw
PDB file :
Tito_Scwrl_2SCU.pdb
: