Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTSQINRQYQLAQR-PSGLPGRDTFSFVET-------PLGEPAEGQILVKNEYLSLDPAMRGWM--NDARSYIPPVGIGEVMRALGVGKVLVSKHPGFQAGDYVNGALGVQDY-FIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV |
4NH4 Chain:B ((10-347)) | ----VNKQVLLKHFIPEGAPKETDMELVTTGTIRLRVPEGSNA---VLLKNLYLSCDPYMRMRMTKHEEASYVDDFVPGAPITGFGVGKVVDSSHPDFKTGDYVWGLIGWEEYSLITKPQGLFKIHHTEIPLSYYTGILGMVGLTAYVGFYDICSPKKGERVFVSAAAGAVGQIVGQFAKQFGCYVVGSAGSDEKVNLLKTKFGFDEAFNYKKEPDLTKALKRYFPEGIDIYFENVGGPMLEAVLHNMRIKGRIAACGMISQY-NLEKPEGVHNLFLIVGKRIRLEGFLVFDHYGSYPEFEEKVVQLIKEEKIKYLEDIVEGLENAPAALIGLFEGRNVGKQVVVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NH4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182336 for 2787 contacts (-65.4/contact) +
2D Compatibility (PS) -34960 + (NN) -14103 + (LL) 324
1D Compatibility (HY) -33600 + (ID) 7300
Total energy: -271975.0 ( -97.59 by residue)
QMean score : 0.449
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