Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNILISGAASGIGAASARLFHRRGWRVGLLDIDAEALRGLAAQLPGAWHRA----VDVSEPDAVGEALAQFC-ADGRLRLLFNCAGVLRFGRFEEVALEDHARLLAINLHGVLNCCHAAFPFLRATPQAQVLNMGSASGLYGVPEMAVYSASKFAVRGLTEALELEWRRHGIRVADLMPPFVRTPM---VAGQAYQPPVLRRLGL--RLDAEDIAEAAWRHAHSRRVHRPVGGLFTALYWAGQLSPPWVNRAVMAWLSRG
2JAP Chain:B ((11-240))
----LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-KGTVVQMSSIAGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIAEAV-RYAVTAPHHATVHEIFIRPTDQV------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153370 for 1853 contacts (-82.8/contact) +
2D Compatibility (PS) -23229 + (NN) -6714 + (LL) 1752
1D Compatibility (HY) -12800 + (ID) 3800
Total energy: -198161.0 ( -106.94 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: