Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
1V7U Chain:B ((19-240))
-----------RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE----PAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------------------
General information:
TITO was launched using:
RESULT:
Template:
1V7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140128 for 1667 contacts (-84.1/contact) +
2D Compatibility (PS) -24475 + (NN) -18448 + (LL) 2260
1D Compatibility (HY) -22000 + (ID) 6200
Total energy: -208991.0 ( -125.37 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_1V7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7U-query.scw
PDB file :
Tito_Scwrl_1V7U.pdb
: