Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLYRAAIHQLFLALDLPTPNDEESVLSLQV--GPHLCHLAEHPTDHLLMFTR---LEGQGDATANEQ-NLFSQDPCKPILGRDPESGERLLWNRQPLQLLDRAQIHHQLEQLVAAAEELR
1TTW Chain:A ((3-120))
---TYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDD-HWLLWSQLNINDTSGTQLASVLTSLVDKAVTLS
General information:
TITO was launched using:
RESULT:
Template:
1TTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37844 for 730 contacts (-51.8/contact) +
2D Compatibility (PS) -12248 + (NN) -5618 + (LL) -184
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -62044.0 ( -84.99 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1TTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TTW-query.scw
PDB file :
Tito_Scwrl_1TTW.pdb
: