Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGVSRLLSLALLG----AALHWAPAQAEEQPRLFELLGQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGNNRLLVAFRGDKSAAYGLQVSLPDEPAEVMQTPSKYATYRWYGEPSRQVRELLMKQLESDPNWK
1YCS Chain:B ((37-165))
--PLALLLDSSLEGEFDLVQRIIYEVD------DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASC------NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEM---------EEGYTQCSQFLYGVQEKM----
General information:
TITO was launched using:
RESULT:
Template:
1YCS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7396 for 1008 contacts (-7.3/contact) +
2D Compatibility (PS) -13797 + (NN) -13759 + (LL) 1504
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -38448.0 ( -38.14 by residue)
QMean score : 0.161
(partial model without unconserved sides chains):
PDB file :
Tito_1YCS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCS-query.scw
PDB file :
Tito_Scwrl_1YCS.pdb
: