Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQ--LDG--SIDTAFCCLGTTIKEA--GSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK-------------SSIFYNRVKGELEQALQEQGWPQLTIARPSLLFGPREEF--RLAEILAA-PIARIL-PGKYHGIEACDLARALWRLALEEGK------GVRFVESDELRKLGK
1VL0 Chain:A ((12-233))
----HMKILITGANGQLGREIQKQLKGKN--VEVIPTDVQ-----------DLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPK-YYIVRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEI-
General information:
TITO was launched using:
RESULT:
Template:
1VL0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89267 for 1539 contacts (-58.0/contact) +
2D Compatibility (PS) -21643 + (NN) -13858 + (LL) 1240
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -130578.0 ( -84.85 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1VL0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL0-query.scw
PDB file :
Tito_Scwrl_1VL0.pdb
: