Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLV--LIHRPSSQ--IQR---LAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPSR--PRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGL-----------PGHEGLFYDSLPSGKSSYVLCKWALDEQAREQA-RNGLPVVIGIPGMVLGELDIGPT-TGRVITAIGNGEMTH-YVAG--QRNVIDAAEAGRGLLMALERGRIGERYLLTGH-NLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTT-ALDDTLLRAIDWFRDNGYFNA |
| 1OC2 Chain:A ((3-328)) | ----------QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN----YNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT----------------DR-AG--------HDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDW-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152852 for 2537 contacts (-60.2/contact) +
2D Compatibility (PS) -32706 + (NN) -14022 + (LL) 3020
1D Compatibility (HY) -2800 + (ID) 2800
Total energy: -202160.0 ( -79.68 by residue)
QMean score : 0.456
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