Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNPQYPTRLPCGSRVLDL-ARPHVMGILNVTPDSFSDGGRYDRLDDALRHAERMVLEGATLIDVGGESTRPGARSVSPTEELERVAPVVERIARELDVVISVDTSTPAVMRETARLGAGLINDVRSLQRDGAL-DAAVDSGLAVCLMHMRGEPQTMQDAPAYQDVVAEVGAFLQERVDACVAAGIDRERLLLDPGFGFAKTLEHNLVLFRHLQALHGLGLPLLVGVSRKSMIGKVLGREVDERLYGSLALAALALAKGARIIRVHDVAATVDVMRMISAVEMAD
4DAF Chain:A ((22-291))
----KWDYDLRCGEYTLNLNEKTLIMGILN----------SYNEVDAAVRHAKEMRDEGAHIIDIG-----------SVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNR-------DNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM----
General information:
TITO was launched using:
RESULT:
Template:
4DAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -215423 for 2098 contacts (-102.7/contact) +
2D Compatibility (PS) -27504 + (NN) -19735 + (LL) 468
1D Compatibility (HY) -20400 + (ID) 4850
Total energy: -287444.0 ( -137.01 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4DAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DAF-query.scw
PDB file :
Tito_Scwrl_4DAF.pdb
: