Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGR---SY-----SKPMLST-----GFS---K---------NKDADG----------LAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEGLEAHLSDGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN--RGIVVDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNP--SQVAYGPMPVTVKTPACPLVVSPPPRGMDGQW------L-------------VEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNKELPGLMA |
| 1GES Chain:A ((3-421)) | --KHYDYIAIGGGSGGIASINRAAMYG--QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVDA--KTLEVNGETITADHILIATGGRPSHPDIPGVE--YGIDSDGFFAL---P---ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA----VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHP-PIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAV------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GES.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -258953 for 2914 contacts (-88.9/contact) +
2D Compatibility (PS) -38289 + (NN) -10005 + (LL) 1384
1D Compatibility (HY) -9600 + (ID) 3300
Total energy: -318763.0 ( -109.39 by residue)
QMean score : 0.414
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