Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSACSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHPNYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWGRTNVNEPASDTLQEVKMRLQEPQSCKH-FTSFQHKSQLCVGNPKKMQNVYKGDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN
1CGH Chain:A ((1-224))
---------------------IIGGRESRPHSRPYMAYLQIQSPAG-QSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMR-RGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRS-
General information:
TITO was launched using:
RESULT:
Template:
1CGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173837 for 1891 contacts (-91.9/contact) +
2D Compatibility (PS) -23701 + (NN) -7764 + (LL) 1860
1D Compatibility (HY) -15600 + (ID) 5000
Total energy: -224042.0 ( -118.48 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1CGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CGH-query.scw
PDB file :
Tito_Scwrl_1CGH.pdb
: