Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KPVC----GVDHYDLIERCYPTT----TLTPPPPPS-QQCCDIVKRTDLLCLCK---------YRFMLPTFGID----YARAIEVPGKCGIPQPKC------------------
1HSS Chain:A ((5-124))
--MCYPGQAFQVPAL-PACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24186 for 378 contacts (-64.0/contact) +
2D Compatibility (PS) -7279 + (NN) -1015 + (LL) 128
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -34202.0 ( -90.48 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: