Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEYQSQLARIQAKITTLKEKDVDLNLFGSESHAYKLNQPLSNQTIAAFENEHQIALPQGYRAFLEQIGDGGMGPYYGLETLVDGLCSSLD-YKAEKYGVQTLSKPFPHTDDWNGPGYKEGMSDEAYDAWQELCFSDKEVFGLLRIANFGCGVSINLVVNGPSYGEIWVDDRNNDNGVYPDFYFGNEERLGFLEWYELWLDKSIEEFEKA
1DVK Chain:A ((79-247))
M--------RIQEAIAQDKTISVIID----------PSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFPLLLQLRRNQLAPDLLISLATVLYHLQ-------QPKEINLAVQSYMKLSI-------------------------GNVAWPIGVANIMID-----------ERTRLWITSIKRLITFEEWYTSNH
General information:
TITO was launched using:
RESULT:
Template:
1DVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12376 for 1092 contacts (-11.3/contact) +
2D Compatibility (PS) -15257 + (NN) -236 + (LL) 2476
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -31193.0 ( -28.57 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_1DVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVK-query.scw
PDB file :
Tito_Scwrl_1DVK.pdb
: