Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLVCNAGMSTSFLVEKMKAAGTEQGVEANIWAVSDAEL-HENWEKADVILL----GPQVGYLKGNTEKVVGGKIPVEVIN----MLDYGRVNGAAVLERAIELIG----------
1BNC Chain:A ((1-127))
MLDKIVIANRGEIALRILRACKELGI-----KTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG
General information:
TITO was launched using:
RESULT:
Template:
1BNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51390 for 729 contacts (-70.5/contact) +
2D Compatibility (PS) -9445 + (NN) 3589 + (LL) 348
1D Compatibility (HY) -800 + (ID) 800
Total energy: -58498.0 ( -80.24 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1BNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BNC-query.scw
PDB file :
Tito_Scwrl_1BNC.pdb
: