Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAIERRDDDMTIVSFEVEISAPIQEVFALLTTNTGLAKWFNEL----EVGELGADGYLLFVMTP--E--EKITMPIRAFEPNQKLAFEWDQ---------DEVAFELNEITANKTRLTFTEQLTTITE--HSPRDISGWHICLKKLQASAEGKIYDFNKTEFKTLFAKYQKELNIEK
3RD6 Chain:A ((4-149))
--------SVIHSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDGAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQRIVFSYRMAIGPQPMSASLTTVELTPSG-DGTRLTYTEQGAFFDGVDSAKGREEGTRGLLEALAAEL---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41826 for 832 contacts (-50.3/contact) +
2D Compatibility (PS) -13016 + (NN) 3563 + (LL) 3128
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -51601.0 ( -62.02 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_3RD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD6-query.scw
PDB file :
Tito_Scwrl_3RD6.pdb
: