Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKHSILLVDGYNMIAFWKDTRQLFKSNRLEEAREVLLRKLNHYAHFEHIDIICVFDAQYVPG--VRQ--RY-DQYKISVIFTE--------EDETADSYIE-RAAAELNQSVLNLVSVATSDLNEQWTIFSQGTLRVSARELEQRVATVKSDLDKMSSQIDLSTPKLRPWNDEQLGKLKDFLDGM
2QIP Chain:A ((10-124))
--EKIAILVDVQNVYYTCREAYRS-NF-DYN----QFWYVATQEK---EVVSAKAY-AIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAP--DVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDFLL----------------
General information:
TITO was launched using:
RESULT:
Template:
2QIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53047 for 669 contacts (-79.3/contact) +
2D Compatibility (PS) -11112 + (NN) -4228 + (LL) 2568
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -67669.0 ( -101.15 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_2QIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QIP-query.scw
PDB file :
Tito_Scwrl_2QIP.pdb
: